PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025912-PA
Common NameOsI_26410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 177aa    MW: 19894.8 Da    PI: 8.6687
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025912-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13954555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      + e+ErrRR r+N  ++ Lr ++Pk      +K+sK ++L  A+e+Ik+Lq
  BGIOSGA025912-PA  9 NLEAERRRRGRLNGNIFALRAVVPKI-----TKMSKEATLSDAIEHIKNLQ 54
                      6689*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-16371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.38E-6357No hitNo description
PROSITE profilePS5088814.107453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-13764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-11854IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-121059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048656Biological Processanther wall tapetum formation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGKEFKSKNL EAERRRRGRL NGNIFALRAV VPKITKMSKE ATLSDAIEHI KNLQNEVLEL  60
QRQLGDSPGE AWEKQGSASC SESFVPTENA HYQGQVELIS LGSSKYNLKI FWTKRAGLFT  120
KVLEALCSYK VQVLSLNTIS FYGYAESFFT IEVKGEQDVV MVELRSLLSS IVEVPSI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1020551e-155flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977257681e-155
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2425160.0AK242516.1 Oryza sativa Japonica Group cDNA, clone: J080312F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645913.11e-125PREDICTED: transcription factor DYT1
SwissprotB9FXT31e-127UDT1_ORYSJ; Transcription factor UDT1
TrEMBLB8B7811e-128B8B781_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA025912-PA1e-128(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119823036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-23bHLH family protein